Zebrafish Atlas
Slides from the Zebrafish Atlas
The following table provides an overview of completed atlas slides. Currently there are 391 slides in the database that are part of the zebrafish atlas. Slides are listed in sequence as indicated at the top of each column, i.e., the most ventral coronal slide is at the end of the series.
Each blue square below represents a slide; click on a square to view a slide.
| Ages |
Coronal (dorsal to ventral) |
Sagittal (left to right) |
Transverse (rostral to caudal) |
| 24hpf | |
|
|
| 30hpf | |
|
|
| 36hpf | |
|
|
| 42hpf | |
|
|
| 48hpf * | |
|
|
| 60hpf | |
|
|
| 3dpf * | |
|
|
| 4dpf * | |
|
|
| 5dpf * | |
|
|
| 6dpf | |
|
|
| 7dpf * | |
|
|
| 10/11dpf | |
|
|
| 14dpf | |
|
|
| 17/18dpf | |
|
|
| 21dpf * | |
|
|
| 30dpf * | |
|
|
| 34dpf/7.8mm * | |
|
|
| 45dpf | |
|
|
| 56dpf/14mm | |
|
|
| 3mpf * | |
|
|
| 6mpf | |
|
|
| 12mpf/1ypf * | |
|
|
| 18mpf | |
|
|
| 24mpf/2ypf * | |
|
|
| 30mpf | |
|
|
| 36mpf/3ypf | |
|
|
* Highlighted ages are high-priority and are expected to be completed before other ages.
Comparisons
Wild-type vs. Golden (gol) mutant |
 |
Click on the image to the left to view a virtual slide comparison of an adult wild-type (Connor) and an adult golden (gol) mutant.
|
Wild-type vs. Huli hutu (hht) mutant |
 |
Mutant image (bottom) is of a 7dpf huli hutu (hht), ENU-generated mutation currently being fine mapped (in-house). Normal image (top) is of a comparable 7dpf wild-type.
|
H & E stain vs. Micro CT |
 |
Micro CT
|
60 dpf Micro CT comparison |
 |
Top: A screen-capture of part of a 3D model generated from these 1500 2D slices in a Volume Graphics software package known as VGStudio Max.
Middle: One of 1500 digital, coronal 2D slices generated by applying the Feldkamp cone-beam reconstruction algorithm to these 600 x-rays.
Bottom: One of 600 x-rays taken through 180° of the head of an unstained, 60 dpf juvenile zebrafish (one x-ray every 0.3°). |
Normal vs. tumor |
 |
Top: a specimen bearing a tumor on the right side of the section. Age: unknown, but older than the bottom fish.
Bottom: a healthy specimen
|

